Basic Information
Locus ID:
Pt_Chr0502878
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 98453919 | 98458644 | + | Pt_Chr0502878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 41,302.45 Da | 42.48 | 79.08 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 307 | 355 | 1.8E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 255 | 7.67E-24 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 263 | 357 | 4.2E-16 | IPR036028 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 42 | 264 | 5.0E-11 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 302 | 357 | 2.0E-15 | - |
| SMART | SM00326 | SH3_2 | 303 | 358 | 5.0E-12 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 300 | 359 | 18.974827 | IPR001452 |
| Coils | Coil | Coil | 241 | 261 | - | - |
| Coils | Coil | Coil | 183 | 210 | - | - |
| Coils | Coil | Coil | 146 | 173 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_051192530.1 | SH3 domain-containing protein 2-like isoform X2 [Lolium perenne] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | F2D3G4 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology