Basic Information
Locus ID:
Pt_Chr0502734
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 91960689 | 91967857 | - | Pt_Chr0502734 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 91,388.81 Da | 38.79 | 85.53 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 52 | 254 | 1.10734E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 9.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 212 | 5.1E-11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 254 | 1.4E-7 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 667 | 810 | 8.4E-46 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 44 | 343 | 1.15E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 43 | 346 | 3.9E-70 | IPR015943 |
| SMART | SM00320 | WD40_4 | 46 | 86 | 0.035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 4.1E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 2.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 303 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 2.5E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 53 | 95 | 10.541869 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 222 | 263 | 15.72169 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 217 | 14.160122 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 18.294891 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.602863 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 53 | 85 | 8.597424 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 222 | 257 | 12.499222 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 9.177421 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 241 | 255 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 7.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 241 | 255 | 7.4E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 7.4E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 41 | 825 | 18.792774 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 408 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 458 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_051188391.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3-like isoform X1 [Lolium perenne] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | F2DZA4 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology