Basic Information
Locus ID:
Pt_Chr0502644
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 88727425 | 88744389 | - | Pt_Chr0502644 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 173,125.38 Da | 55.36 | 69.39 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 583 | 605 | 0.0025 | IPR001876 |
| Pfam | PF12274 | Protein of unknown function (DUF3615) | 1128 | 1214 | 1.5E-15 | IPR022059 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 548 | 576 | 4.4E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 506 | 538 | 1.71E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 543 | 577 | 1.18E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 579 | 611 | 3.3E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 540 | 578 | 5.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 501 | 539 | 8.9E-11 | - |
| SMART | SM00547 | zf_4 | 550 | 574 | 1.0E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 511 | 535 | 3.8E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 583 | 607 | 9.2E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 509 | 538 | 9.382329 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 581 | 610 | 9.653342 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 548 | 577 | 10.116323 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 552 | 571 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 585 | 604 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1315 | 1340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 723 | 779 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 706 | - | - |
| Coils | Coil | Coil | 28 | 59 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_047085763.1 | zinc finger protein VAR3, chloroplastic-like [Lolium rigidum] | 0 |
| TrEMBL | A0A0Q3JNP7 | Zinc finger protein VAR3, chloroplastic OS=Brachypodium distachyon OX=15368 GN=100833528 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology