Basic Information
Locus ID:
Pt_Chr0502527
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 82796899 | 82802135 | - | Pt_Chr0502527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 59,303.96 Da | 44.53 | 87.28 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 227 | 525 | 4.3181E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 489 | 525 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 482 | 0.0047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 226 | 263 | 1.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 274 | 308 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 222 | 525 | 9.16E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 216 | 487 | 1.8E-50 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 488 | 534 | 2.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 399 | 437 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 366 | 99.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 526 | 3.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 441 | 483 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 308 | 1.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 3.2E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 276 | 317 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 493 | 534 | 12.841948 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 30 | 62 | 8.805831 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 276 | 313 | 11.418318 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 231 | 265 | 9.783781 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 231 | 272 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 534 | 13.917108 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_047093050.1 | WD repeat-containing protein WDS homolog isoform X1 [Lolium rigidum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | I1I4I5 | LisH domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100828210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology