Basic Information
Locus ID:
Pt_Chr0502502
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 82121050 | 82124233 | + | Pt_Chr0502502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 33,571.17 Da | 43.24 | 65.05 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 232 | 290 | 9.1E-26 | IPR039512 |
| Pfam | PF13445 | RING-type zinc-finger | 185 | 225 | 1.3E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 231 | 2.94E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 149 | 178 | 6.93E-7 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 256 | 298 | 1.6E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 249 | 5.0E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 185 | 227 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 117 | 184 | 14.929963 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 228 | 11.751628 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_037461372.1 | E3 ubiquitin-protein ligase RZFP34-like isoform X1 [Triticum dicoccoides] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V2P3 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_22109 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology