Basic Information
Locus ID:
Pt_Chr0502483
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 81409772 | 81412760 | - | Pt_Chr0502483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 30,886.90 Da | 50.38 | 54.45 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 10 | 91 | 8.0E-18 | IPR008913 |
| Pfam | PF13445 | RING-type zinc-finger | 152 | 192 | 1.1E-6 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 199 | 257 | 7.5E-26 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 198 | 2.61E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 6 | 80 | 5.36E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 145 | 9.02E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 223 | 265 | 2.0E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 215 | 1.6E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 152 | 194 | 2.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 152 | 195 | 11.751628 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 3 | 79 | 23.56452 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 81 | 151 | 32.451488 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_047046092.1 | E3 ubiquitin-protein ligase RZFP34-like [Lolium rigidum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YW72 | RING finger and CHY zinc finger domain-containing protein 1 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology