Basic Information
Locus ID:
Pt_Chr0502382
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 71954534 | 71959538 | - | Pt_Chr0502382 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 78,709.02 Da | 46.73 | 83.11 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 292 | 326 | 0.00418811 | - |
| Pfam | PF13855 | Leucine rich repeat | 148 | 208 | 4.8E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 73 | 6.1E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 425 | 692 | 1.5E-37 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 405 | 692 | 2.22E-66 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 31 | 245 | 5.89E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 498 | 8.5E-27 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 270 | 2.7E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 716 | 1.1E-51 | - |
| SMART | SM00369 | LRR_typ_2 | 171 | 194 | 23.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 124 | 68.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 217 | 62.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 197 | 219 | 7.565642 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 421 | 695 | 33.700417 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 427 | 450 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_047045681.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like isoform X1 [Lolium rigidum] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7C7S8 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G303000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology