Basic Information
Locus ID:
Pt_Chr0502228
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 66584369 | 66586841 | - | Pt_Chr0502228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 36,710.61 Da | 29.86 | 88.92 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 184 | 338 | 1.28663E-77 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 157 | 1.05336E-46 | - |
| Pfam | PF00190 | Cupin | 8 | 139 | 2.1E-22 | IPR006045 |
| Pfam | PF00190 | Cupin | 178 | 324 | 8.8E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 6 | 330 | 2.31E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 8 | 163 | 1.0E-24 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 180 | 341 | 1.8E-50 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 181 | 325 | 1.6E-19 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 143 | 2.1E-22 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 302 | 319 | 1.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 280 | 298 | 1.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 262 | 277 | 1.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 197 | 217 | 1.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 244 | 260 | 1.4E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_044984570.1 | legumin A-like [Hordeum vulgare subsp. vulgare] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | F2D9Z5 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology