Basic Information
Locus ID:
Pt_Chr0502123
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 63457244 | 63458340 | + | Pt_Chr0502123 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 38,432.26 Da | 46.87 | 84.48 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 14 | 143 | 9.70155E-25 | IPR002083 |
| Pfam | PF00917 | MATH domain | 37 | 143 | 2.4E-5 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 173 | 287 | 7.8E-20 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 11 | 151 | 1.01E-28 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 160 | 287 | 2.83E-25 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 287 | 353 | 2.8E-16 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 159 | 284 | 7.5E-29 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 13 | 147 | 3.3E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 182 | 288 | 2.1E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 182 | 248 | 15.742047 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 13 | 143 | 20.595497 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.1 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_051230108.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium perenne] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | M8AH45 | BTB/POZ and MATH domain-containing protein 1 OS=Triticum urartu OX=4572 GN=TRIUR3_18041 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009577, gene-QYE76_010150 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502123 |