Basic Information
Locus ID:
Pt_Chr0502105
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
TIR1
Description:
Transport inhibitor response 1-like protein Os05g0150500
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 62659635 | 62664539 | + | Pt_Chr0502105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 65,258.38 Da | 46.62 | 90.10 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 10 | 50 | 1.6E-6 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 70 | 116 | 2.6E-19 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 45 | 7.33E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 77 | 532 | 3.14E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 584 | 8.9E-167 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 49 | 9.9E-9 | - |
| SMART | SM00367 | LRR_CC_2 | 133 | 158 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 108 | 132 | 570.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 376 | 400 | 0.3 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_047042750.1 | transport inhibitor response 1-like protein Os05g0150500 [Lolium rigidum] | 0 |
| Q0DKP3 | Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0150500 PE=2 SV=2 | 0 | |
| TrEMBL | I1HLS4 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Brachypodium distachyon OX=15368 GN=100822026 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology