Basic Information
Locus ID:
Pt_Chr0502018
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 59349125 | 59352472 | - | Pt_Chr0502018 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 104,727.59 Da | 39.79 | 100.87 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 187 | 206 | 0.3 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 451 | 473 | 1.6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 64 | 5.6E-13 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 259 | 317 | 7.1E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 670 | 936 | 3.1E-43 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 300 | 1.12E-50 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 239 | 559 | 2.28E-61 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 670 | 938 | 1.17E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 134 | 175 | 3.0E-7 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 742 | 944 | 3.0E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 235 | 2.3E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 662 | 741 | 1.5E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 133 | 3.7E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 303 | 592 | 4.2E-76 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 236 | 302 | 8.3E-18 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 185 | 209 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 257 | 280 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 473 | 497 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 521 | 544 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 449 | 472 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 89 | 113 | 24.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 667 | 942 | 7.3E-33 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 667 | 942 | 38.562511 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 115 | 137 | 7.196008 | IPR001611 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 789 | 801 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 673 | 696 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72180.1 | Leucine-rich receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_051179744.1 | receptor protein-tyrosine kinase CEPR2 [Lolium perenne] | 0 |
| Q9C7T7 | Receptor protein-tyrosine kinase CEPR2 OS=Arabidopsis thaliana OX=3702 GN=CEPR2 PE=1 SV=1 | 0 | |
| TrEMBL | F2CXR0 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg12208, jg23255 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022741 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g001710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3768, Sbi_jg49018 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6218 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000703 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10773, Sgl16126 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012663, gene:ENSEOMG00000034737 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0001120, CQ.Regalona.r1.2BG0027240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30167900, pistato.v30287680 |
| Apiaceae | Apium graveolens | 2 | Ag10G01341, Ag3G01856 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G021180, COCNU_02G011540, COCNU_15G003830 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704812, gene-LOC103711101, gene-LOC103716635 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1024.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G06379 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G72180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018075m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g27270.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g050350.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g06640 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g08740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1123 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037651 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12167 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4065, AH04.886, BH02.4075, BH04.842, CH01.2558 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0041900, gene-QOZ80_1BG0091800 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0344810.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_064246, gene-QYE76_064318 |
| Poaceae | Oryza coarctata | 4 | Oco01G026400, Oco02G027400, Oco21G003500, Oco22G004240 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g65650.1, LOC_Os11g12530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G355300, gene-BS78_05G121600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107626, Pt_Chr0502018 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G003170, Chr03G021310, Chr05G030050, Chr07G018920 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G143300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG035790, gene_TRIDC4BG014300 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G224700.1, TraesCS4B02G091500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb145890_P001, Zm00001eb167820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11201 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18624, Zma_g9122 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2065, evm.TU.LG04.2067, evm.TU.LG06.249 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1344, evm.TU.Scaffold_8_RagTag.499 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-18415, nbisL1-mrna-20155, nbisL1-mrna-9762 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13495, nbisL1-mrna-2228 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13305, nbisL1-mrna-18082 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.282, evm.TU.utg000018l.677 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011604 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20333, nbisL1-mrna-20554 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18544, nbisL1-mrna-18668 |
| Salicaceae | Populus euphratica | 1 | populus_peu18974 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132626968, gene-LOC132644132 |
| Solanaceae | Solanum chilense | 2 | SOLCI000511700, SOLCI001279800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107004701, gene-LOC107023111 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.10186_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2416 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10370.v3.1 |