halophFGD

Basic Information

Locus ID: Pt_Chr0501995

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: generation of catalytic spliceosome for first transesterification step

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	58877834	58883174	+	Pt_Chr0501995

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.39	58,441.64 Da	40.91	83.32	-0.16

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF50978	WD40 repeat-like	437	506	7.51E-7	IPR036322
Gene3D	G3DSA:2.130.10.10	-	433	514	1.1E-8	IPR015943
SMART	SM00320	WD40_4	438	489	0.0028	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	457	492	8.834696	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	457	498	11.611251	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10599 (pre-mRNA-processing factor 19 [EC:2.3.2.27])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33340.3	MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
RefSeq	XP_047059002.1	uncharacterized protein LOC124665651 [Lolium rigidum]
Swiss-Prot	Q9AV81	Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1
TrEMBL	A0A5J9U490	Pre-mRNA-processing factor 19 OS=Eragrostis curvula OX=38414 GN=EJB05_34565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101359, Pt_Chr0107667, Pt_Chr0501995, Pt_Chr0505332