Basic Information
Locus ID:
Pt_Chr0501776
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 51785983 | 51793430 | - | Pt_Chr0501776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 58,957.70 Da | 58.88 | 54.73 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 487 | 529 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 482 | 532 | 6.6E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 464 | 535 | 3.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 488 | 528 | 2.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 488 | 529 | 12.754832 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 75 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37150.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047045783.1 | probable E3 ubiquitin-protein ligase RHG1A isoform X1 [Lolium rigidum] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7JWH7 | RING-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology