Basic Information
Locus ID:
Pt_Chr0501730
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 50633033 | 50642087 | + | Pt_Chr0501730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 77,577.15 Da | 39.05 | 103.26 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 378 | 652 | 5.9E-38 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 163 | 223 | 9.4E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 126 | 254 | 1.28E-30 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 358 | 657 | 1.31E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 290 | 1.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 345 | 450 | 8.4E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 464 | 668 | 3.6E-58 | - |
| SMART | SM00220 | serkin_6 | 375 | 656 | 3.0E-21 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 375 | 662 | 33.686283 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 381 | 403 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 506 | 518 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60800.1 | NSP-interacting kinase 3. | 0 |
| RefSeq | XP_051221823.1 | protein NSP-INTERACTING KINASE 3-like [Lolium perenne] | 0 |
| Q93ZS4 | Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana OX=3702 GN=NIK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6WBT1 | Protein kinase domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology