Basic Information
Locus ID:
Pt_Chr0501698
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 49828662 | 49832604 | - | Pt_Chr0501698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 46,067.74 Da | 44.53 | 76.57 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 291 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 295 | 8.61E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 32 | 325 | 4.0E-16 | IPR015943 |
| SMART | SM00320 | WD40_4 | 208 | 248 | 0.19 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 292 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 74 | 110.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_047043391.1 | autophagy-related protein 18d-like [Lolium rigidum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7JYU7 | Autophagy-related protein 18c OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology