Basic Information
Locus ID:
Pt_Chr0501697
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 49789860 | 49797976 | - | Pt_Chr0501697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 52,068.07 Da | 39.45 | 86.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 20 | 107 | 7.77249E-17 | - |
| CDD | cd04476 | RPA1_DBD_C | 288 | 418 | 1.24986E-27 | IPR013955 |
| CDD | cd04481 | RPA1_DBD_B_like | 142 | 245 | 2.09905E-11 | - |
| Pfam | PF08646 | Replication factor-A C terminal domain | 306 | 420 | 1.9E-13 | IPR013955 |
| Pfam | PF16900 | Replication protein A OB domain | 139 | 226 | 2.9E-7 | IPR031657 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 4 | 117 | 8.14E-13 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 285 | 420 | 4.11E-24 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 122 | 249 | 3.71E-13 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 5 | 109 | 1.1E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 116 | 254 | 4.9E-23 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 273 | 429 | 1.6E-30 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19130.1 | Replication factor-A protein 1-related. | 0 |
| RefSeq | XP_051179060.1 | replication protein A 70 kDa DNA-binding subunit C-like [Lolium perenne] | 0 |
| F4JSG3 | Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1 | 0 | |
| TrEMBL | R7VZN8 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology