halophFGD

Basic Information

Locus ID: Pt_Chr0501510

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: PPR repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr05	43199749	43206748	-	Pt_Chr0501510

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.24	74,960.91 Da	47.86	88.08	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00673	ribosomal L5P family C-terminus	563	661	1.6E-19	IPR031309
Pfam	PF00281	Ribosomal protein L5	506	559	1.7E-19	IPR031310
Pfam	PF13041	PPR repeat family	332	379	4.5E-17	IPR002885
Pfam	PF13041	PPR repeat family	188	238	5.2E-10	IPR002885
Pfam	PF01535	PPR repeat	264	293	0.008	IPR002885
Pfam	PF01535	PPR repeat	298	329	0.36	IPR002885
SUPERFAMILY	SSF55282	RL5-like	505	670	2.35E-54	IPR022803
Gene3D	G3DSA:3.30.1440.10	-	498	674	4.5E-70	IPR022803
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	139	255	5.5E-25	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	1	137	2.8E-6	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	256	310	3.0E-7	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	311	450	1.8E-30	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	264	296	3.5E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	191	226	3.7E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	369	402	5.3E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	228	253	2.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	334	368	2.5E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	155	189	0.0017	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	298	333	6.8E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	296	331	10.818861	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	153	188	10.917512	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	332	366	14.282632	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	367	401	12.254791	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	189	224	9.613118	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	261	295	10.325603	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	225	255	9.54735	IPR002885
ProSitePatterns	PS00358	Ribosomal protein L5 signature.	536	552	-	IPR020929

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003735 (structural constituent of ribosome) GO:0005515 (protein binding)

Cellular Component:

GO:0005840 (ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G42740.1	ribosomal protein large subunit 16A. encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.
RefSeq	XP_047042677.1	putative pentatricopeptide repeat-containing protein At1g53330 [Lolium rigidum]
Swiss-Prot	A2YDY2	Large ribosomal subunit protein uL5 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2
TrEMBL	A0A3B6NK07	Pentatricopeptide repeat-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg19296, jg21322, jg23826, jg36765, jg7853
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26007
Amaranthaceae	Atriplex hortensis	3	Ah011715, Ah035922, Ah035923
Amaranthaceae	Beta vulgaris	1	BVRB_9g209130
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10186, Sbi_jg11999, Sbi_jg26394, Sbi_jg46926
Amaranthaceae	Salicornia europaea	2	Seu_jg21214, Seu_jg22250
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00009557
Amaranthaceae	Suaeda glauca	4	Sgl54387, Sgl59719, Sgl80403, Sgl82864
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000018004, gene:ENSEOMG00000029355 ... gene:ENSEOMG00000032368, gene:ENSEOMG00000038104, gene:ENSEOMG00000053064
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0009700, CQ.Regalona.r1.9BG0012890
Anacardiaceae	Pistacia vera	1	pistato.v30072060
Apiaceae	Apium graveolens	3	Ag2G01661, Ag3G00530, Ag8G00963
Arecaceae	Cocos nucifera	3	COCNU_03G013930, COCNU_05G010030, scaffold021465G000040
Arecaceae	Phoenix dactylifera	3	gene-LOC103701994, gene-LOC103704876, gene-LOC103711522
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1566.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G30229, Ftri15G06658, Ftri18G20368
Brassicaceae	Arabidopsis thaliana	4	AT2G42740.1, AT3G58700.1, AT4G18730.1, AT5G45775.2
Brassicaceae	Eutrema salsugineum	3	Thhalv10001041m.g.v1.0, Thhalv10006260m.g.v1.0 ... Thhalv10026344m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g10690.v2.2, Sp5g04150.v2.2, Sp7g17430.v2.2
Brassicaceae	Brassica nigra	9	BniB02g062710.2N, BniB02g071770.2N, BniB04g011450.2N ... BniB04g016050.2N, BniB05g017640.2N, BniB06g054730.2N, BniB06g063320.2N, BniB07g023700.2N, BniB08g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G2890
Casuarinaceae	Casuarina glauca	1	Cgl02G3012
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno02g16400
Dunaliellaceae	Dunaliella salina	1	Dusal.0453s00002.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g23180
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3431, nbisL1-mrna-7565, nbisL1-mrna-909
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.1687, evm.TU.LG12.796
Plantaginaceae	Plantago ovata	2	Pov_00001769, Pov_00028336
Plumbaginaceae	Limonium bicolor	4	Lb1G00417, Lb2G11900, Lb4G24322, Lb4G24342
Poaceae	Echinochloa crus-galli	7	AH02.328, AH02.329, AH06.1960, BH02.356, BH06.1793, CH02.393 ... CH06.1987
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0107340, gene-QOZ80_2BG0160980 ... gene-QOZ80_5AG0401770, gene-QOZ80_5BG0450330, gene-QOZ80_6AG0542540, gene-QOZ80_6BG0495760
Poaceae	Lolium multiflorum	3	gene-QYE76_010406, gene-QYE76_017921, gene-QYE76_051042
Poaceae	Oryza coarctata	6	Oco01G004640, Oco02G004650, Oco04G006670, Oco09G004400 ... Oco10G004380, Oco11G010800
Poaceae	Oryza sativa	4	LOC_Os01g10820.1, LOC_Os02g14059.1, LOC_Os05g11710.1 ... LOC_Os06g35730.1
Poaceae	Paspalum vaginatum	4	gene-BS78_03G024100, gene-BS78_04G099200 ... gene-BS78_09G082500, gene-BS78_10G160900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205165, Pt_Chr0206401, Pt_Chr0501510
Poaceae	Sporobolus alterniflorus	7	Chr02G028760, Chr05G006410, Chr10G016130, Chr11G006260 ... Chr12G025690, Chr18G004220, Chr22G013040
Poaceae	Thinopyrum elongatum	3	Tel1E01G124200, Tel1E01G228500, Tel3E01G230800
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG017970, gene_TRIDC1BG021990 ... gene_TRIDC3AG017690, gene_TRIDC3BG021910
Poaceae	Triticum aestivum	6	TraesCS1A02G125100.1, TraesCS1B02G144300.1 ... TraesCS1D02G128800.1, TraesCS3A02G136800.1, TraesCS3B02G154600.1, TraesCS3D02G137600.1
Poaceae	Zea mays	5	Zm00001eb120820_P001, Zm00001eb204910_P002 ... Zm00001eb238930_P002, Zm00001eb347380_P001, Zm00001eb384890_P001
Poaceae	Zoysia japonica	3	nbis-gene-10255, nbis-gene-19309, nbis-gene-24384
Poaceae	Zoysia macrostachya	3	Zma_g30681, Zma_g32919, Zma_g9596
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.376, evm.TU.LG02.2043, evm.TU.LG04.379 ... evm.TU.LG23.322
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g02650, gene.Posoc08g09920
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_12_RagTag.813, evm.TU.Scaffold_5_RagTag.1285 ... evm.TU.Scaffold_9_RagTag.1174
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-11763, nbisL1-mrna-21000, nbisL1-mrna-24047
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-16678
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11168, nbisL1-mrna-18676, nbisL1-mrna-7705
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.753, evm.TU.utg000027l.145
Rhizophoraceae	Kandelia obovata	3	Maker00006312, Maker00009943, Maker00013995
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1330, nbisL1-mrna-9790
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19981, nbisL1-mrna-4895
Salicaceae	Populus euphratica	7	populus_peu12208, populus_peu14366, populus_peu14367 ... populus_peu18012, populus_peu18013, populus_peu18029, populus_peu18030
Solanaceae	Lycium barbarum	5	gene-LOC132618097, gene-LOC132623030, gene-LOC132629901 ... gene-LOC132636578, gene-LOC132643541
Solanaceae	Solanum chilense	4	SOLCI000358800, SOLCI000416100, SOLCI003236600 ... SOLCI006038200
Solanaceae	Solanum pennellii	4	gene-LOC107002727, gene-LOC107007694, gene-LOC107010651 ... gene-LOC107026569
Tamaricaceae	Reaumuria soongarica	3	gene_13431, gene_5825, gene_9753
Tamaricaceae	Tamarix chinensis	2	TC01G1965, TC08G0419
Zosteraceae	Zostera marina	1	Zosma01g23310.v3.1