Basic Information
Locus ID:
Pt_Chr0501467
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 41203432 | 41207425 | - | Pt_Chr0501467 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 26,483.76 Da | 52.80 | 69.92 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 27 | 234 | 6.4E-74 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 135 | 224 | 1.44E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 131 | 237 | 4.4E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 137 | 225 | 26.765467 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 93 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_047044938.1 | auxin-responsive protein IAA17-like [Lolium rigidum] | 0 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 0 | |
| TrEMBL | I1HKT2 | Auxin-responsive protein OS=Brachypodium distachyon OX=15368 GN=100839395 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology