Basic Information
Locus ID:
Pt_Chr0501438
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 39937082 | 39942619 | - | Pt_Chr0501438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 62,906.32 Da | 55.16 | 100.75 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 3 | 41 | 9.0E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 62 | 107 | 2.5E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 25 | 399 | 2.04E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 349 | 513 | 6.67E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 572 | 5.2E-165 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 40 | 1.6E-14 | - |
| SMART | SM00367 | LRR_CC_2 | 365 | 389 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 4.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 425 | 449 | 6.3 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_044382002.1 | transport inhibitor response 1-like protein Os11g0515500 [Triticum aestivum] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6KLL6 | Uncharacterized protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology