Basic Information
Locus ID:
Pt_Chr0501393
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 38739386 | 38742181 | - | Pt_Chr0501393 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 51,804.78 Da | 43.53 | 77.83 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 124 | 440 | 1.7E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 83 | 479 | 1.44E-121 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 81 | 470 | 8.9E-112 | IPR012334 |
| SMART | SM00710 | pbh1 | 280 | 301 | 1500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 303 | 324 | 1600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 363 | 384 | 480.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 334 | 355 | 5.2 | IPR006626 |
| SMART | SM00710 | pbh1 | 230 | 279 | 2300.0 | IPR006626 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_047044810.1 | polygalacturonase At1g48100-like [Lolium rigidum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453S5J2 | Polygalacturonase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology