Basic Information
Locus ID:
Pt_Chr0501276
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 33563853 | 33576079 | + | Pt_Chr0501276 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 105,316.46 Da | 45.46 | 82.30 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 751 | 906 | 9.34858E-58 | - |
| Pfam | PF06337 | DUSP domain | 41 | 138 | 3.2E-24 | IPR006615 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 312 | 905 | 2.7E-85 | IPR001394 |
| SUPERFAMILY | SSF143791 | DUSP-like | 15 | 138 | 6.67E-28 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 310 | 908 | 2.94E-112 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 297 | 535 | 5.5E-68 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 724 | 916 | 2.2E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 238 | 5.2E-14 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 13 | 150 | 5.3E-34 | - |
| SMART | SM00695 | dusp | 37 | 140 | 2.6E-24 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 312 | 908 | 59.086533 | IPR028889 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 18 | 137 | 19.165852 | IPR006615 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 313 | 328 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 850 | 867 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10570.1 | ubiquitin-specific protease 9. encodes a ubiquitin-specific protease family member, UBP9. | 0 |
| RefSeq | XP_051190025.1 | ubiquitin carboxyl-terminal hydrolase 9-like [Lolium perenne] | 0 |
| Q9ZSB5 | Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=UBP10 PE=2 SV=2 | 0 | |
| TrEMBL | A0A452Y8F8 | Ubiquitin carboxyl-terminal hydrolase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology