Basic Information
Locus ID:
Pt_Chr0501230
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 31583984 | 31584749 | + | Pt_Chr0501230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 22,209.31 Da | 41.32 | 73.40 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 164 | 3.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 120 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 17 | 194 | 3.26E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 5 | 194 | 4.0E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 164 | 8.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 35 | 73 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 120 | 4.5E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 87 | 129 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 87 | 123 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 173 | 14.084198 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 130 | 166 | 11.049229 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 151 | 165 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. | 0 |
| RefSeq | XP_047087152.1 | uncharacterized protein LOC124698751 isoform X2 [Lolium rigidum] | 0 |
| Q5I0B9 | Autophagy-related protein 16 OS=Xenopus tropicalis OX=8364 GN=atg16 PE=2 SV=2 | 0 | |
| TrEMBL | A0A453T9Y0 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology