Basic Information
Locus ID:
Pt_Chr0501214
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 31355478 | 31355975 | + | Pt_Chr0501214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 18,837.57 Da | 41.31 | 87.45 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 6 | 41 | 4.0E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 7 | 91 | 1.69E-11 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 92 | 1.2E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 93 | 164 | 2.0E-20 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_051228335.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium perenne] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452ZT59 | BTB domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505280.1 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0300620, Pt_Chr0501214 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G689100, Tel6E01G793000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG055630, gene_TRIDC3BG073430 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G419800.1.cds1, TraesCS6B02G470400.1.cds1 |