Basic Information
Locus ID:
Pt_Chr0500915
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 23151770 | 23157111 | - | Pt_Chr0500915 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 66,186.07 Da | 32.97 | 78.72 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 45 | 286 | 2.84077E-61 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 406 | 505 | 2.1E-8 | IPR000719 |
| Pfam | PF00139 | Legume lectin domain | 43 | 290 | 4.7E-54 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 41 | 293 | 5.13E-58 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 387 | 514 | 1.2E-18 | IPR011009 |
| Gene3D | G3DSA:2.60.120.200 | - | 40 | 296 | 1.9E-62 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 476 | 1.4E-14 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 405 | 609 | 11.467634 | IPR000719 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28350.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_051205908.1 | L-type lectin-domain containing receptor kinase VIII.1-like [Lolium perenne] | 0 |
| P19664 | Anti-H(O) lectin OS=Lotus tetragonolobus OX=3868 PE=1 SV=2 | 0 | |
| TrEMBL | M8D1L3 | Lectin-domain containing receptor kinase A4.2 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH04.1995, BH04.2001, BH04.2004, BH04.2007, BH04.2008 |
| Poaceae | Hordeum vulgare | 8 | HORVU.MOREX.r3.2HG0097640.1, HORVU.MOREX.r3.2HG0097720.1 ... |
| Poaceae | Lolium multiflorum | 15 | gene-QYE76_004354, gene-QYE76_004356, gene-QYE76_004362 ... |
| Poaceae | Oryza coarctata | 2 | Oco08G000910, Oco08G000950 |
| Poaceae | Oryza sativa | 16 | LOC_Os04g03370.1, LOC_Os04g03380.1, LOC_Os04g03530.1 ... |
| Poaceae | Paspalum vaginatum | 10 | gene-BS78_K006300, gene-BS78_K006400, gene-BS78_K006500 ... |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0300137, Pt_Chr0402868, Pt_Chr0500818, Pt_Chr0500820 ... |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G056800, Tel2E01G048600, Tel2E01G048700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG001630, gene_TRIDC2BG001740 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2B02G007400.2, TraesCS2B02G008400.1 ... |