Basic Information
Locus ID:
Pt_Chr0500889
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 22391833 | 22406829 | - | Pt_Chr0500889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 271,640.41 Da | 46.02 | 99.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 1573 | 1701 | 6.22515E-28 | IPR038005 |
| Pfam | PF18052 | Rx N-terminal domain | 14 | 93 | 8.1E-8 | IPR041118 |
| Pfam | PF18052 | Rx N-terminal domain | 1574 | 1660 | 5.0E-21 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 1769 | 1954 | 1.5E-37 | IPR002182 |
| Pfam | PF00931 | NB-ARC domain | 175 | 432 | 5.2E-37 | IPR002182 |
| Pfam | PF03081 | Exo70 exocyst complex subunit | 1217 | 1563 | 4.1E-107 | IPR004140 |
| SUPERFAMILY | SSF74788 | Cullin repeat-like | 1069 | 1563 | 1.05E-130 | IPR016159 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1769 | 1994 | 7.77E-53 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 539 | 916 | 1.26E-16 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 2059 | 2268 | 4.76E-22 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 169 | 444 | 2.46E-49 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1743 | 1893 | 2.4E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 167 | 322 | 6.7E-28 | IPR027417 |
| Gene3D | G3DSA:1.20.5.4130 | - | 1573 | 1687 | 3.5E-35 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 125 | 3.6E-9 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 1980 | 2068 | 6.3E-14 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 525 | 942 | 1.5E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2111 | 2273 | 2.6E-17 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 424 | 518 | 3.3E-11 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 1902 | 1979 | 2.0E-12 | IPR042197 |
| Gene3D | G3DSA:1.20.1280.170 | Exocyst complex component Exo70 | 1052 | 1563 | 3.1E-150 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 709 | 725 | 9.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 267 | 281 | 9.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 377 | 391 | 9.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 195 | 210 | 9.8E-14 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 991 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2381 | 2417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2381 | 2399 | - | - |
| Coils | Coil | Coil | 1072 | 1092 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50380.1 | exocyst subunit exo70 family protein F1. A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. | 0 |
| RefSeq | XP_047042921.1 | disease resistance protein RGA5-like, partial [Lolium rigidum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZN60 | NB-ARC domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology