Basic Information
Locus ID:
Pt_Chr0500833
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter transmembrane region 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 21432396 | 21441229 | + | Pt_Chr0500833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 172,681.34 Da | 41.98 | 103.00 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14798 | RX-CC_like | 11 | 131 | 1.12867E-11 | IPR038005 |
| Pfam | PF00560 | Leucine Rich Repeat | 565 | 583 | 0.99 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 184 | 380 | 4.3E-30 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 15 | 89 | 2.7E-17 | IPR041118 |
| Pfam | PF00560 | Leucine Rich Repeat | 1330 | 1352 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 768 | 1371 | 4.08E-39 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1393 | 1543 | 3.06E-9 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 488 | 818 | 3.23E-55 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 157 | 420 | 5.55E-44 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 524 | 882 | 2.2E-75 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 401 | 499 | 5.2E-10 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 884 | 1176 | 2.2E-22 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 13 | 98 | 9.4E-15 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 314 | 2.4E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1385 | 1543 | 1.1E-11 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1207 | 1384 | 2.2E-24 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 1281 | 1304 | 220.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 1328 | 1355 | 31.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 1328 | 1352 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 822 | 845 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 846 | 869 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 656 | 680 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 752 | 776 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 565 | 585 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 929 | 953 | 34.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 800 | 828 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1153 | 1183 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 846 | 867 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 632 | 659 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 752 | 785 | 690.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 728 | 751 | 240.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 848 | 869 | 7.126702 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 564 | 585 | 7.296117 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 187 | 202 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 750 | 766 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 355 | 369 | 1.2E-15 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 259 | 273 | 1.2E-15 | - |
| Coils | Coil | Coil | 1284 | 1307 | - | - |
| Coils | Coil | Coil | 33 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39850.1 | peroxisomal ABC transporter 1. Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. | 0 |
| RefSeq | XP_047056133.1 | putative disease resistance protein RGA1 [Lolium rigidum] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 0 | |
| TrEMBL | M8C2H7 | Putative disease resistance protein RGA1 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology