Basic Information
Locus ID:
Pt_Chr0500715
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
defense response to oomycetes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 18098758 | 18107681 | - | Pt_Chr0500715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 88,259.07 Da | 40.62 | 93.51 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 113 | 373 | 6.3E-48 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 493 | 753 | 6.5E-36 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 98 | 365 | 2.16E-69 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 487 | 760 | 2.16E-54 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 462 | 564 | 3.8E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 566 | 769 | 9.7E-42 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 204 | 458 | 1.7E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 91 | 183 | 7.5E-22 | - |
| SMART | SM00220 | serkin_6 | 489 | 755 | 6.5E-12 | IPR000719 |
| SMART | SM00220 | serkin_6 | 112 | 380 | 6.4E-43 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 489 | 756 | 28.894855 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 112 | 381 | 35.325825 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 118 | 140 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 244 | 256 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 433 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25490.1 | Protein kinase family protein. | 0 |
| RefSeq | XP_020157168.1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK4 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9LSV3 | Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana OX=3702 GN=WAKL16 PE=3 SV=1 | 0 | |
| TrEMBL | N1QZA5 | Cysteine-rich receptor-like protein kinase 19 OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0053720.1, HORVU.MOREX.r3.1HG0053770.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0500715 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG029910, gene_TRIDC1BG000320 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G197000.2, TraesCS1B02G211600.1 ... |