Basic Information
Locus ID:
Pt_Chr0500709
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
protein dimerization activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 17873330 | 17881410 | - | Pt_Chr0500709 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 49,273.57 Da | 61.05 | 77.31 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 41 | 101 | 3.49E-9 | IPR036047 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 438 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051214324.1 | uncharacterized protein LOC127332108 isoform X1 [Lolium perenne] | 0 |
| TrEMBL | A0A3B6A2P0 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH02.1933, CH02.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_4BG0352940, gene-QOZ80_6AG0533510 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_008233, gene-QYE76_008236, gene-QYE76_008837 ... |
| Poaceae | Oryza coarctata | 2 | Oco01G010670, Oco01G011070 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28520.1, LOC_Os01g32640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G371000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0500709, Pt_Chr0704898 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G000930, Chr25G013870, Chr25G013880, Chr27G016500 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G069100, Tel1E01G099600, Tel1E01G744700 |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G439200.1, TraesCS1B02G055300.1 ... |