Basic Information
Locus ID:
Pt_Chr0500635
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 16247665 | 16249587 | + | Pt_Chr0500635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.89 | 53,256.72 Da | 53.62 | 85.12 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 288 | 407 | 3.30499E-49 | - |
| CDD | cd00121 | MATH | 144 | 273 | 1.87918E-30 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 293 | 408 | 1.6E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 283 | 409 | 1.57E-28 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 143 | 278 | 1.44E-34 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 279 | 405 | 2.1E-34 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 143 | 277 | 1.5E-31 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 410 | 481 | 7.0E-15 | - |
| SMART | SM00225 | BTB_4 | 302 | 410 | 2.5E-22 | IPR000210 |
| SMART | SM00061 | math_3 | 148 | 255 | 3.0E-6 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 302 | 369 | 16.858875 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 143 | 272 | 20.774485 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047095567.1 | BTB/POZ and MATH domain-containing protein 2-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5XUZ1 | Speckle-type POZ protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0110870, gene-QOZ80_2BG0164290 ... |
| Poaceae | Hordeum vulgare | 13 | HORVU.MOREX.r3.5HG0427590.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_009241, gene-QYE76_009243, gene-QYE76_016733 ... |
| Poaceae | Oryza coarctata | 1 | Oco04G008990 |
| Poaceae | Oryza sativa | 6 | LOC_Os02g20590.1, LOC_Os02g20600.1, LOC_Os02g20620.1 ... |
| Poaceae | Puccinellia tenuiflora | 11 | Pt_Chr0103080, Pt_Chr0103081, Pt_Chr0104126, Pt_Chr0104129 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G001120, Chr09G001130 |
| Poaceae | Thinopyrum elongatum | 16 | Tel1E01G144500, Tel1E01G145100, Tel1E01G145300 ... |
| Poaceae | Triticum dicoccoides | 21 | gene_TRIDC1AG009740, gene_TRIDC1AG009770 ... |
| Poaceae | Triticum aestivum | 51 | TraesCS1A02G070700.1.cds1, TraesCS1A02G070800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34043 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21999 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.1995_chr01_- |