Basic Information
Locus ID:
Pt_Chr0500615
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 15459536 | 15487258 | - | Pt_Chr0500615 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 271,147.22 Da | 44.56 | 101.64 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 816 | 837 | 0.34 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 677 | 697 | 0.93 | IPR001611 |
| Pfam | PF18052 | Rx N-terminal domain | 13 | 92 | 7.4E-19 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 167 | 406 | 3.0E-38 | IPR002182 |
| Pfam | PF00560 | Leucine Rich Repeat | 1844 | 1866 | 0.28 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 1704 | 2033 | 5.34E-26 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 489 | 788 | 1.87E-46 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 149 | 419 | 6.48E-51 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1089 | 1184 | 1.02E-6 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1508 | 1782 | 5.49E-41 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 2095 | 2308 | 5.26E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 724 | 1067 | 2.59E-28 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1904 | 2082 | 1.7E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2087 | 2332 | 3.8E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 526 | 715 | 6.7E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1094 | 1194 | 3.1E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 717 | 888 | 3.3E-31 | IPR032675 |
| Gene3D | G3DSA:1.20.5.4130 | - | 12 | 130 | 7.8E-16 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 147 | 311 | 1.9E-31 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 910 | 1080 | 2.4E-9 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1497 | 1690 | 2.8E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1691 | 1899 | 1.5E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 318 | 404 | 2.8E-5 | IPR042197 |
| Gene3D | G3DSA:1.10.10.10 | - | 405 | 500 | 6.5E-11 | IPR036388 |
| SMART | SM00369 | LRR_typ_2 | 1749 | 1773 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2183 | 2207 | 67.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 675 | 699 | 120.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 1624 | 1647 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 651 | 674 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1749 | 1776 | 9.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 2159 | 2186 | 65.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 1842 | 1866 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 814 | 837 | 0.23 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 1842 | 1869 | 640.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1648 | 1675 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 675 | 702 | 49.0 | IPR006553 |
| SMART | SM00369 | LRR_typ_2 | 727 | 752 | 82.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1709 | 1734 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1648 | 1671 | 140.0 | IPR003591 |
| SMART | SM00367 | LRR_CC_2 | 776 | 797 | 360.0 | IPR006553 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1844 | 1866 | 7.311519 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 816 | 837 | 7.342321 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 185 | 200 | 3.1E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 256 | 270 | 3.1E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 353 | 367 | 3.1E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 835 | 851 | 3.1E-17 | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
| Coils | Coil | Coil | 108 | 128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_024314951.1 | putative disease resistance protein RGA3 isoform X3 [Brachypodium distachyon] | 0 |
| Q7XA42 | Putative disease resistance protein RGA1 OS=Solanum bulbocastanum OX=147425 GN=RGA1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6A3H2 | P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology