Basic Information
Locus ID:
Pt_Chr0500612
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ADP binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 15437013 | 15441976 | - | Pt_Chr0500612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 149,661.48 Da | 48.28 | 103.88 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 600 | 621 | 0.26 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 794 | 816 | 0.54 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 79 | 316 | 1.5E-37 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 330 | 2.02E-48 | IPR027417 |
| SUPERFAMILY | SSF52047 | RNI-like | 1071 | 1312 | 1.92E-32 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 410 | 858 | 7.82E-57 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1240 | 1326 | 2.3E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 637 | 866 | 7.6E-44 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 446 | 636 | 3.9E-36 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 58 | 224 | 3.6E-28 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1073 | 1239 | 4.6E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 892 | 1052 | 4.4E-11 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 316 | 422 | 8.5E-7 | IPR036388 |
| Gene3D | G3DSA:1.10.8.430 | - | 229 | 315 | 5.1E-6 | IPR042197 |
| SMART | SM00367 | LRR_CC_2 | 573 | 596 | 53.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 792 | 819 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 1272 | 1299 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 597 | 624 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 647 | 675 | 510.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 696 | 723 | 26.0 | IPR006553 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 794 | 817 | 7.735057 | IPR001611 |
| PRINTS | PR00364 | Disease resistance protein signature | 264 | 278 | 1.3E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 96 | 111 | 1.3E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 694 | 710 | 1.3E-16 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 168 | 182 | 1.3E-16 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_014754554.1 | putative disease resistance protein RGA3 isoform X2 [Brachypodium distachyon] | 0 |
| Q7XBQ9 | Disease resistance protein RGA2 OS=Solanum bulbocastanum OX=147425 GN=RGA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6A3H2 | P-loop containing nucleoside triphosphate hydrolase, leucine-rich repeat domain, L OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology