Basic Information
Locus ID:
Pt_Chr0500288
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 7420486 | 7421589 | + | Pt_Chr0500288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 41,945.58 Da | 39.10 | 79.29 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 38 | 2.8E-8 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 213 | 280 | 5.9E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 39 | 4.58E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 163 | 282 | 2.75E-5 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 5 | 41 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 2.7E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 91 | 285 | 3.9E-26 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07870.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_051213699.1 | F-box protein At3g07870-like [Lolium perenne] | 0 |
| Q9SFC7 | F-box protein At3g07870 OS=Arabidopsis thaliana OX=3702 GN=At3g07870 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6DM20 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology