Basic Information
Locus ID:
Pt_Chr0500199
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 5012293 | 5014899 | - | Pt_Chr0500199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 58,732.12 Da | 50.64 | 70.37 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 223 | 516 | 1.20057E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 378 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 430 | 0.058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 480 | 516 | 0.082 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 260 | 316 | 3.6E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 221 | 518 | 4.39E-55 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 170 | 519 | 1.4E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 433 | 473 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 8.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 0.0021 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 430 | 0.0068 | IPR001680 |
| SMART | SM00320 | WD40_4 | 295 | 334 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 516 | 0.002 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 346 | 378 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 387 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 301 | 11.043142 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 72 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_051219125.1 | cell division cycle 20.2, cofactor of APC complex-like [Lolium perenne] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | I1J1D4 | ANAPC4_WD40 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100831204 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology