Basic Information
Locus ID:
Pt_Chr0500111
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
APC11
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr05 | 2952111 | 2954298 | - | Pt_Chr0500111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 9,675.20 Da | 31.41 | 59.29 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16456 | RING-H2_APC11 | 20 | 82 | 6.05233E-37 | IPR024991 |
| Pfam | PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger | 1 | 83 | 5.0E-42 | IPR024991 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1 | 83 | 2.07E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 1.5E-28 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 34 | 77 | 10.792683 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05870.1 | anaphase-promoting complex/cyclosome 11. Subunit of the anaphase promoting complex, a ubiquitin ligase complex that regulates progression through the cell cycle. | 0 |
| RefSeq | XP_047086576.1 | anaphase-promoting complex subunit 11 [Lolium rigidum] | 0 |
| Q9M9L0 | Anaphase-promoting complex subunit 11 OS=Arabidopsis thaliana OX=3702 GN=APC11 PE=1 SV=3 | 0 | |
| TrEMBL | A0A453I9C8 | Anaphase-promoting complex subunit 11 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11852 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079360 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg43063 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11505 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24060, Sgl29242 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0005160, CQ.Regalona.r1.4AG0010620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30195120 |
| Apiaceae | Apium graveolens | 1 | Ag5G00079 |
| Arecaceae | Cocos nucifera | 1 | contig69567357G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720289 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.144.V1.1, AsparagusV1_07.2301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G31473 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G05870.1, AT5G26640.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005548m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g04760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g078700.2N, BniB04g004510.2N, BniB07g032680.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0019 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0020, Cgl06G1153 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno17g01430, gene.Cymno17g01510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0342s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07280 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001783, Pov_00040386 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17986 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.4538 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0031840, gene-QOZ80_1BG0082060 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0383160.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000504, gene-QYE76_068548 |
| Poaceae | Oryza coarctata | 2 | Oco05G011290, Oco06G011530 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g19059.1, LOC_Os07g22840.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G381900, gene-BS78_03G117800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0500111 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G032610, Chr04G014200, Chr07G002370, Chr12G006930 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G018900, Tel4E01G334500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG016320, gene_TRIDC4BG032630 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G118100.1.cds1, TraesCS4D02G187600.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3552, nbis-gene-57012 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1245, evm.TU.LG22.152 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g11130 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11005, nbisL1-mrna-21330 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009211, Maker00013934 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10383 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15444, nbisL1-mrna-4735 |
| Salicaceae | Populus euphratica | 1 | populus_peu24079 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598521, gene-LOC132615929 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008147 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_519 |
| Zosteraceae | Zostera marina | 2 | Zosma05g21550.v3.1, Zosma05g28110.v3.1 |