Basic Information
Locus ID:
Pt_Chr0405899
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Vacuolar protein sorting protein 11 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 201643293 | 201648573 | - | Pt_Chr0405899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 107,600.21 Da | 38.79 | 89.48 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16688 | RING-H2_Vps11 | 862 | 902 | 6.27181E-22 | - |
| Pfam | PF00637 | Region in Clathrin and VPS | 406 | 526 | 7.8E-14 | IPR000547 |
| Pfam | PF12451 | Vacuolar protein sorting protein 11 C terminal | 904 | 946 | 8.2E-14 | IPR024763 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 36 | 333 | 5.19E-8 | IPR036322 |
| SUPERFAMILY | SSF57850 | RING/U-box | 863 | 904 | 3.21E-5 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 347 | 642 | 3.2E-7 | IPR011990 |
| PIRSF | PIRSF007860 | Vps11 | 1 | 574 | 8.5E-178 | IPR016528 |
| PIRSF | PIRSF007860 | Vps11 | 566 | 953 | 8.8E-103 | IPR016528 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 864 | 899 | 9.287877 | IPR001841 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 398 | 549 | 25.399616 | IPR000547 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 567 | 778 | 10.201795 | IPR000547 |
| Coils | Coil | Coil | 821 | 855 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05170.1 | vacuolar protein sorting 11. Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. | 0 |
| RefSeq | XP_051216757.1 | vacuolar protein-sorting-associated protein 11 homolog [Lolium perenne] | 0 |
| Q9SJ40 | Vacuolar protein-sorting-associated protein 11 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XJG7 | Vacuolar protein sorting-associated protein 11 homolog OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19084 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5519 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028612 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26813, Sbi_jg33752, Sbi_jg33753 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8445 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011693 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73551, Sgl77072 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000005084, gene:ENSEOMG00000036042 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007630, CQ.Regalona.r1.9BG0007690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30017230 |
| Apiaceae | Apium graveolens | 2 | Ag3G00028, Ag3G02191 |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G005340, COCNU_13G003490, COCNU_13G003540 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104977, gene-LOC120108245 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2265.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G12822 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G05170.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002393m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g23690.v2.2, SpUn0142_0010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g033770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0049 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g06620, gene.Cymno14g09200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g13880 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031814 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19638 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.2764, BH06.2554, CH06.2855, CH09.850 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0320570, gene-QOZ80_4BG0351970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0162070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_043550 |
| Poaceae | Oryza coarctata | 2 | Oco07G003870, Oco08G004070 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g31390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G065600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0303039, Pt_Chr0405899 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G015010, Chr26G004800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G504700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG040800, gene_TRIDC2BG043770 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G282100.1, TraesCS2B02G299300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb420950_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44913, nbis-gene-7896 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21145 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.208, evm.TU.LG24.446 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g19030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.1617 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-12103 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1253 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10900 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.929 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013249 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10459 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15551 |
| Salicaceae | Populus euphratica | 2 | populus_peu26903, populus_peu26913 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644226 |
| Solanaceae | Solanum chilense | 1 | SOLCI004826100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023204 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_151 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G0186, TC09G0733 |
| Zosteraceae | Zostera marina | 1 | Zosma05g02070.v3.1 |