Basic Information
Locus ID:
Pt_Chr0405814
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 198784488 | 198809350 | + | Pt_Chr0405814 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 163,352.45 Da | 44.35 | 71.96 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05147 | RIO1_euk | 215 | 404 | 1.69073E-133 | - |
| Pfam | PF01163 | RIO1 family | 226 | 411 | 1.1E-70 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1101 | 1462 | 1.22E-32 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 214 | 397 | 1.63E-23 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 320 | 461 | 4.2E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 212 | 314 | 4.7E-36 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1082 | 1282 | 4.1E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1283 | 1476 | 1.1E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1173 | 1222 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1376 | 1419 | 4.0E-4 | IPR001680 |
| SMART | SM00090 | rio_2 | 184 | 420 | 5.4E-112 | IPR000687 |
| SMART | SM00320 | WD40_4 | 1132 | 1170 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1301 | 1341 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1423 | 1462 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1236 | 1275 | 420.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 201 | 555 | 8.499495 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1387 | 1420 | 8.837541 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1406 | 1420 | - | IPR019775 |
| ProSitePatterns | PS01245 | RIO1/ZK632.3/MJ0444 family signature. | 353 | 364 | - | IPR018935 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 864 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 676 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37350.1 | Serine/threonine-protein kinase Rio1. | 0 |
| RefSeq | XP_047092905.1 | uncharacterized protein LOC124704679 [Lolium rigidum] | 0 |
| Q54VD8 | Serine/threonine-protein kinase rio1 OS=Dictyostelium discoideum OX=44689 GN=rio1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8R7R009 | WD_REPEATS_REGION domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25762 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19832 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001817 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg31930, Sbi_jg57574, Sbi_jg57577 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25257 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00025111 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl54180, Sgl59487, Sgl59522 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004772, gene:ENSEOMG00000021711 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0016780, CQ.Regalona.r1.5BG0018080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30028280 |
| Apiaceae | Apium graveolens | 1 | Ag9G00541 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G003160, COCNU_11G003170 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707865, gene-LOC120104671, gene-LOC120111431 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1455.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G50410.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10014456m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp6g12560.v2.2, SpUn0015_0080.v2.2, SpUn0039_0020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g060720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2048 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G2227, Cgl01G2248 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g03970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1078 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028946 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27261 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.2297, CH08.2474 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638950, gene-QOZ80_8BG0666890 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0683950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030257 |
| Poaceae | Oryza coarctata | 2 | Oco15G010050, Oco16G012430 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g41900.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G202300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306494, Pt_Chr0405814 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G017780, Chr17G017080, Chr20G001220, Chr29G001550 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G457300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG024980 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G260200.1, TraesCS7B02G158200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb175120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17511 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24427 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.2269, evm.TU.LG07.2157 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g12510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.360 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29011 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-88 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1951 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.230 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000836 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14681 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1360 |
| Salicaceae | Populus euphratica | 2 | populus_peu28850, populus_peu30256 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632618 |
| Solanaceae | Solanum chilense | 1 | SOLCI007106100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012157 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2625 |