Basic Information
Locus ID:
Pt_Chr0405794
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 198228216 | 198232806 | - | Pt_Chr0405794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 66,496.83 Da | 38.57 | 96.23 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 290 | 556 | 1.8E-41 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 39 | 78 | 1.3E-13 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 85 | 141 | 2.6E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 180 | 1.4E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 267 | 557 | 3.5E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 195 | 5.1E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 364 | 576 | 1.8E-60 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 256 | 363 | 7.4E-38 | - |
| SMART | SM00369 | LRR_typ_2 | 104 | 128 | 1.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 152 | 175 | 45.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 287 | 556 | 2.2E-31 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 106 | 128 | 7.280716 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 287 | 577 | 34.138569 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 406 | 418 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 293 | 315 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 152 | 165 | 1.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 107 | 120 | 1.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16000.1 | NSP-interacting kinase 1. NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP). | 0 |
| RefSeq | XP_051192880.1 | LRR receptor kinase SERL2-like [Lolium perenne] | 0 |
| Q9FP13 | LRR receptor kinase SERL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERL2 PE=1 SV=1 | 0 | |
| TrEMBL | M8C758 | Putative LRR receptor-like serine/threonine-protein kinase OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology