Basic Information
Locus ID:
Pt_Chr0405771
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 197602352 | 197605376 | - | Pt_Chr0405771 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 77,573.97 Da | 45.42 | 92.58 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 68 | 235 | 1.6E-22 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 64 | 239 | 1.07E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 68 | 239 | 4.5E-39 | IPR036465 |
| SMART | SM00327 | VWA_4 | 66 | 242 | 2.0E-23 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 68 | 237 | 19.427935 | IPR002035 |
| Coils | Coil | Coil | 375 | 411 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044407157.1 | probable E3 ubiquitin-protein ligase WAVH2 isoform X2 [Triticum aestivum] | 0 |
| F4JSV3 | Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana OX=3702 GN=EDA40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NJI0 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology