Basic Information
Locus ID:
Pt_Chr0405768
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 197502218 | 197505393 | - | Pt_Chr0405768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 80,567.53 Da | 50.26 | 91.45 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 72 | 237 | 3.5E-21 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 68 | 241 | 1.95E-28 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 72 | 241 | 7.3E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 70 | 244 | 1.5E-21 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 72 | 239 | 18.670683 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 513 | - | - |
| Coils | Coil | Coil | 381 | 417 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044407157.1 | probable E3 ubiquitin-protein ligase WAVH2 isoform X2 [Triticum aestivum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NJI0 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology