Basic Information
Locus ID:
Pt_Chr0405599
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 192756564 | 192767831 | + | Pt_Chr0405599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 111,318.15 Da | 37.41 | 78.06 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 9 | 61 | 2.73715E-13 | - |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 593 | 907 | 5.5E-52 | IPR023753 |
| Pfam | PF13639 | Ring finger domain | 8 | 61 | 1.9E-7 | IPR001841 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 593 | 936 | 3.47E-36 | IPR036188 |
| SUPERFAMILY | SSF57850 | RING/U-box | 8 | 67 | 3.53E-11 | - |
| Gene3D | G3DSA:3.30.390.30 | - | 927 | 1013 | 2.6E-24 | IPR016156 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 179 | 6.4E-12 | IPR013083 |
| Gene3D | G3DSA:3.50.50.60 | - | 595 | 909 | 1.4E-103 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 717 | 844 | 1.4E-103 | IPR036188 |
| SMART | SM00184 | ring_2 | 9 | 60 | 3.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 9 | 61 | 11.95817 | IPR001841 |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 836 | 852 | 1.4E-23 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 749 | 767 | 1.4E-23 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 595 | 614 | 1.4E-23 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 703 | 721 | 1.4E-23 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 862 | 884 | 1.4E-23 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 593 | 615 | 3.2E-15 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 837 | 851 | 3.2E-15 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 749 | 774 | 3.2E-15 | - |
| PRINTS | PR00411 | Pyridine nucleotide disulphide reductase class-I signature | 877 | 884 | 3.2E-15 | - |
| Coils | Coil | Coil | 116 | 164 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63940.1 | monodehydroascorbate reductase 6. | 0 |
| RefSeq | XP_022683451.1 | uncharacterized protein LOC101785289 [Setaria italica] | 0 |
| Q84PW3 | Monodehydroascorbate reductase 5, chlorplastic OS=Oryza sativa subsp. japonica OX=39947 GN=MDAR5 PE=2 SV=2 | 0 | |
| TrEMBL | M7ZLK7 | Monodehydroascorbate reductase, chloroplastic OS=Triticum urartu OX=4572 GN=TRIUR3_31588 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4772, jg7655 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1797 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004559 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g099950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23928, Sbi_jg7758 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12270 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001140 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52110, Sgl57371 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006034, gene:ENSEOMG00000022025 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0006830, CQ.Regalona.r1.5BG0007080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30135440 |
| Apiaceae | Apium graveolens | 1 | Ag11G03795 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G007280 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715799 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.274.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G04818 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G63940.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023425m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g00750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g023750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0293 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G0339, Cgl03G0375 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04820 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g09290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11236 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1451 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005258 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37904 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.308, BH08.310, CH08.386 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0617310, gene-QOZ80_8BG0644940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0700760.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_032505, gene-QYE76_032520 |
| Poaceae | Oryza coarctata | 1 | Oco15G002080 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g05570.3 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G042600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0405599 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G001170, Chr17G001110 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G525700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042440, gene_TRIDC7BG033580 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G304000.1, TraesCS7B02G204400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb416430_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41573 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23612 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.492, evm.TU.LG17.495 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06770 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.159 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18244 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2857 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8570 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000007l.288 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018397 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16013 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10935 |
| Salicaceae | Populus euphratica | 1 | populus_peu03607 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634855 |
| Solanaceae | Solanum chilense | 1 | SOLCI003810000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028810 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13893 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3380, TC06G0187 |