Basic Information
Locus ID:
Pt_Chr0405591
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Phloem protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 192581969 | 192584967 | + | Pt_Chr0405591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 33,087.26 Da | 40.23 | 78.24 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 63 | 2.8E-4 | IPR001810 |
| Pfam | PF14299 | Phloem protein 2 | 129 | 305 | 7.8E-33 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 71 | 5.63E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 102 | 1.4E-5 | - |
| SMART | SM00256 | fbox_2 | 23 | 63 | 0.0066 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56240.1 | phloem protein 2-B13. | 0 |
| RefSeq | XP_047048912.1 | F-box protein PP2-B10-like [Lolium rigidum] | 0 |
| Q949S5 | F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453RYQ5 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology