Basic Information
Locus ID:
Pt_Chr0405384
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 184153885 | 184157024 | + | Pt_Chr0405384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 90,961.22 Da | 37.63 | 80.37 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 99 | 839 | 5.1E-297 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 287 | 623 | 1.35E-53 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 290 | 614 | 7.1E-15 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20250.4 | Raffinose synthase family protein. encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. | 0 |
| RefSeq | XP_051204606.1 | probable galactinol--sucrose galactosyltransferase 6 isoform X1 [Lolium perenne] | 0 |
| Q8RX87 | Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana OX=3702 GN=RFS6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6S9N8 | galactinol--sucrose galactosyltransferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology