Basic Information
Locus ID:
Pt_Chr0405152
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 178108546 | 178114458 | - | Pt_Chr0405152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 105,432.53 Da | 43.73 | 73.11 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 482 | 536 | 2.77533E-27 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 547 | 904 | 1.3E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 205 | 332 | 2.0E-7 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 482 | 537 | 1.3E-9 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 376 | 904 | 4.34E-73 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 469 | 537 | 1.63E-11 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 700 | 870 | 1.3E-241 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 141 | 319 | 7.6E-42 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 378 | 922 | 1.3E-241 | - |
| SMART | SM00298 | chromo_7 | 481 | 540 | 1.3E-4 | IPR000953 |
| SMART | SM00439 | BAH_4 | 200 | 334 | 8.0E-11 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 482 | 535 | 11.724901 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 376 | 911 | 44.823853 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 200 | 334 | 16.287056 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 552 | 564 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 641 | 654 | 1.2E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 377 | 393 | 1.2E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 595 | 609 | 1.2E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 113 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_047056253.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium rigidum] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology