Basic Information
Locus ID:
Pt_Chr0405128
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 177540249 | 177556198 | - | Pt_Chr0405128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 136,909.77 Da | 49.28 | 72.63 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 1211 | 1256 | 3.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 528 | 574 | 3.53E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1208 | 1261 | 5.65E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1167 | 1260 | 9.8E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1213 | 1256 | 9.612443 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 743 | 784 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1167 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 733 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 372 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051209401.1 | uncharacterized protein LOC127326637 [Lolium perenne] | 0 |
| TrEMBL | A0A8I6YG73 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology