Basic Information
Locus ID:
Pt_Chr0404976
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 174039414 | 174040421 | + | Pt_Chr0404976 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 36,169.41 Da | 74.72 | 69.34 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 194 | 236 | 1.31929E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 16 | 49 | 1.4E-11 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 194 | 236 | 8.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 248 | 1.06E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 242 | 5.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 195 | 235 | 7.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 195 | 236 | 12.341748 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 128 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051199891.1 | probable E3 ubiquitin-protein ligase RHC1A [Lolium perenne] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6Y584 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology