Basic Information
Locus ID:
Pt_Chr0404960
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 173618261 | 173621449 | - | Pt_Chr0404960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 94,961.29 Da | 40.99 | 68.65 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 143 | 189 | 5.2E-11 | IPR006652 |
| Pfam | PF00646 | F-box domain | 1 | 31 | 4.6E-4 | IPR001810 |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 506 | 848 | 7.0E-47 | IPR012871 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 37 | 9.16E-5 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 72 | 327 | 1.26E-41 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 61 | 332 | 1.3E-39 | IPR015915 |
| SMART | SM00612 | kelc_smart | 106 | 154 | 0.0086 | IPR006652 |
| SMART | SM00612 | kelc_smart | 155 | 204 | 3.7E-5 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_047087818.1 | F-box/kelch-repeat protein At2g44130-like [Lolium rigidum] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7U431 | F-box domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology