Basic Information
Locus ID:
Pt_Chr0404705
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 168208335 | 168212563 | - | Pt_Chr0404705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 43,332.72 Da | 50.15 | 112.99 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 14 | 53 | 3.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 55 | 8.63E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 136 | 337 | 9.02E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 55 | 9.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 129 | 361 | 6.2E-7 | IPR032675 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66290.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_051216064.1 | F-box/LRR-repeat protein 13-like [Lolium perenne] | 0 |
| Q9C8Y8 | Putative F-box/FBD/LRR-repeat protein At1g66290 OS=Arabidopsis thaliana OX=3702 GN=At1g66290 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9W1D4 | F-box domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_14636 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH03.203, CH03.323 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629230.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041302, gene-QYE76_041311 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G031700, gene-BS78_02G031800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404642, Pt_Chr0404705, Pt_Chr0604369 |
| Poaceae | Thinopyrum elongatum | 4 | Tel6E01G701900, Tel6E01G702100, Tel6E01G702600 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG057750, gene_TRIDC6BG067240 |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G389500.1, TraesCS6A02G390000.1 ... |