Basic Information
Locus ID:
Pt_Chr0404491
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 163179627 | 163185900 | - | Pt_Chr0404491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 42,876.55 Da | 56.25 | 82.93 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.28262E-29 | - |
| Pfam | PF09280 | XPC-binding domain | 281 | 336 | 1.0E-19 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.0E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 203 | 3.6E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 364 | 399 | 8.4E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 163 | 216 | 5.33E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 348 | 406 | 4.86E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 7.37E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 277 | 343 | 1.7E-19 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 273 | 337 | 2.1E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 208 | 3.1E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.3E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 356 | 403 | 5.6E-20 | - |
| SMART | SM00165 | uba_6 | 165 | 205 | 3.0E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.2E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 364 | 401 | 2.9E-7 | IPR015940 |
| SMART | SM00727 | CBM | 277 | 322 | 4.4E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 407 | 6.6E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 206 | 12.667379 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.043465 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 361 | 402 | 14.908409 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 375 | 389 | 1.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 374 | 1.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 307 | 329 | 1.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 390 | 405 | 1.4E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 249 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047071531.1 | ubiquitin receptor RAD23d-like [Lolium rigidum] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0Q3H6U6 | Ubiquitin receptor RAD23 OS=Brachypodium distachyon OX=15368 GN=100838271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology