Basic Information
Locus ID:
Pt_Chr0404449
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 162131258 | 162134771 | - | Pt_Chr0404449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 66,925.09 Da | 38.05 | 97.87 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 167 | 186 | 0.37 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 143 | 165 | 0.23 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 304 | 569 | 2.9E-42 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 52 | 91 | 2.3E-11 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 191 | 8.93E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 278 | 570 | 3.69E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 209 | 2.0E-42 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 269 | 376 | 3.3E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 377 | 589 | 4.4E-61 | - |
| SMART | SM00220 | serkin_6 | 300 | 569 | 3.0E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 300 | 590 | 34.802868 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 419 | 431 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 306 | 328 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 165 | 178 | 5.4E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 144 | 157 | 5.4E-6 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16000.1 | NSP-interacting kinase 1. NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP). | 0 |
| RefSeq | XP_051203748.1 | LRR receptor kinase SERL2-like isoform X1 [Lolium perenne] | 0 |
| Q9FP13 | LRR receptor kinase SERL2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERL2 PE=1 SV=1 | 0 | |
| TrEMBL | I1GZ29 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100830910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology