Basic Information
Locus ID:
Pt_Chr0404275
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr04 | 157228271 | 157232095 | - | Pt_Chr0404275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 77,640.17 Da | 48.70 | 97.22 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 72 | 228 | 9.8E-19 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 68 | 239 | 1.34E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 72 | 243 | 9.3E-34 | IPR036465 |
| SMART | SM00327 | VWA_4 | 70 | 243 | 9.1E-22 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 72 | 241 | 18.653072 | IPR002035 |
| Coils | Coil | Coil | 380 | 423 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_037449561.1 | probable E3 ubiquitin-protein ligase WAVH2 [Triticum dicoccoides] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NJI0 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology